Dr. Katie Bentley
Dr. Katie Bentley |
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Postdoctoral Fellow |
Papers:
Guarani, V., Deflorian, Claudio A. Franco, Marcus Krüger, Li-Kun Phng, Katie Bentley, Louise Toussaint, Franck Dequied, Raul Mostoslavsky, Mirko H.H. Schmidt, Barbara Zimmermann, Ralf P. Brandes, Marina Mione, Christoph H. Westphal, Thomas Braun, Andreas M. Zeiher, Holger Gerhardt, Stefanie Dimmeler, Michael Potente, (2011)
Acetylation-dependent regulation of endothelial Notch signalling by the SIRT1 deacetylase. Nature. In Press.
Bentley, K., Clack C., Cox, E. J. (2011)
Diatom colony formation: A computational study predicts a single mechanism can produce both linkage and separation valves due to an environmental switch.Journal of Phycology. In Press
Black, E. and Bentley, K. (2011) An empirical study of a deliberation dialogue system.
Lecture Notes in Computer Science (TAFA workshop, IJCAI conference, Barcelona) In Press
Jakobsson,
L., Franco, C., Bentley, K., Collins, R., Ponsioen, B., Aspalter, I.
M., Rosewell, I., Busse, M., Medvinsky, A., Schulte-Merker, S.,
Gerhardt, H. (2010) Endothelial
cells dynamically compete for the tip cell position during angiogenic
sprouting.
Nature
Cell Biology. doi:10.1038/ncb2103
Bentley,
K., Mariggi, G., Gerhardt, H. and Bates, P. A. (2009) Tipping
the balance: Robustness of Tip Cell Selection, Migration and Fusion
in Angiogenesis.
PLoS
Computational Biology 5(10):
e1000549. doi:10.1371/journal.pcbi.1000549 .
Jakobsson,
L., Bentley, K., Gerhardt,H. (2009) VEGFRs
and Notch: a dynamic collaboration in vascular patterning.
J.
Biochem. Soc. Trans.
37(6). Bentley,
K., Gerhardt, H. and Bates, P. A. (2008).
Agent-based
simulation of notch mediated tip cell selection in angiogenic sprout
initialisation. Journal
of Theoretical Biology,
250(1):25-36.
Bentley,
K., Cox, E. J., Bentley, P. J. (2005). Nature's
Batik: A Computer Evolution Model of Diatom Valve Morphogenesis.
Journal
of Nanoscience and Nanotechnology 5(1):
25-34. (or email me nicely for a draft).
Bentley,
K and Clack, C. (2005). Morphological
Plasticity: Environmentally Driven Morphogenesis.
In Advances in Artificial Life (Lecture notes in AI series)
Proceedings
of the Eighth European Conference on Artificial Life (ECAL '05).
Capcarrere, M. et al. (eds). Pp. 118-127. Springer-Verlag.
Bentley,
K and Clack, C. (2004). The Artificial
Cytoskeleton for Lifetime Adaptation in Morphology.
In
Workshop Proceedings
of the 9th International Conference on the Simulation and Synthesis
of Living Systems (Alife IX). Bedau,
M., Husbands, P., Hutton, T., Kumar, S., Suzuki, H.(Eds.)
Pp 13-16.
Bentley,
K. (2002). Exploring
Aesthetic Pattern Formation.
In Proceedings
of 5th
Annual
International Conference on Generative Art,
Milan. Chapter 20.1.
PhD
Thesis: Bentley,
K. (2006) Dept. Computer Science, UCL. Adaptive
Behaviour Through Morphological Plasticity in Natural and Artificial
Systems (pdf)
or zipped version
Poster
Presentations: Bentley,
K., Jakobsson, L., Mariggi, G., Bates. P. A, and Gerhardt, H. (2008)
Tipped
for the top: computer simulations of Notch signaling during sprouting
reveal the tip cell phenotype to be continually in flux as cells
fight for the tip position.
(POSTER) NAVBO
Developmental Vascular Biology Workshop IV, Monterey Bay California,
February 2010 [WINNER Outstanding Poster Prize] abstract. Bentley,
K., Sauvaget, D. and Gerhardt, H. (2008) Dll4/Notch
oscillations disrupt vascular patterning during tumour angiogenesis .
(POSTER) 12th
International Symposium on Anti-Angiogenic Agents. San Diego,
February 2010 link Bentley,
K. Gerhardt, H. and Bates, P. A. (2008) COMPUTATIONAL
MODELLING OF CELL MIGRATION IN ANGIOGENESIS.
(POSTER) Frontiers
in Cell Migration, NIH, Bethesda, Sept 2008. Abstract
(page 102) Poster
Bentley,
K. Gerhardt, H. and Bates, P. A. (2007) Computer Simulation of
notch mediated tip cell selection in angiogenesis. (POSTER) NCRI
conference, Birmingham, Sept 2007
Bentley,
K. (2003) Evolving
Complex Forms to Self-Assemble a Self-Replicating Functional Form.
(POSTER) In
Evolvability, Genetics & Development in Natural and Constructed
Systems: Abstracts of the EPSRC Evolvability Network Symposium.
Dept. Comp. Sci., University of Hertfordshire, Technical Report No:
389. C. L. Nehaniv, P. J. Bentley, S. Kumar (Eds.) Pp 17. Abstract,
Poster(10
MB). Slide
Presentations:
Tipping
the Balance: agent-based modelling of tip cell selection, migration
and fusion sprouting
-
Invited speaker UCLA, Los Angeles 2010 -
Invited speaker Angionet meeting Dundee 2009 -
invited seminar Centre for Mathematical Biology. Oxford
University, June 2008 Agent-based
simulation of notch mediated tip cell selection during angiogenic
sprouting
-
invited seminar Computer Science Dept. Imperial College London,
March 2008 -
invited seminar Computer Science Dept. Kings College London, Dec
2007 -
invited seminar Computer Science Dept. University of Sheffield,
Nov 2007 -
invited seminar Mathematics Dept. University of Nottingham, Nov
2007 -
invited seminar, 3rd Angionet Meeting Colraine, Northern Ireland
18-20th June 2007 Morphological
Plasticity: Environmentally Driven Morphogenesis. Eighth
European Conference on Artificial Life (ECAL '05). September
5-9th 2005, Kent, Canterbury.
Morphological
plasticity: Dynamic, Situated Morphologies.
Workshop on the
Dynamical Systems approach to Life and Cognition organised by
activate.d (active agents and their environments as dynamical systems
reading group), University of Sussex, 8-9th March 2005.
Morphological
plasticity as Adaptive Behaviour in Natural and Artificial Systems.
Bloomsbury Centre for Bioinformatics seminar, Birkbeck College,
February 16th 2005.
The
Artificial cytoskeleton for Lifetime Adaptation of Morphology.
Ninth International Conference of Artificial Life, Boston, September
2004
(Developing
the Artificial Cytoskeleton: adaptation through morphogenesis in
diatoms.
Nature Inspired Computing Consortium meeting 10/11 Feb, London 2004.
Exploring
Aesthetic Pattern Formation. nUCLEAR
talk, CS, UCL 2002 and Generative Art Conference Presentation, Milan
2002
In
the Media:
Cohen, P. NATURAL GLASS. NewScientist. Cover
date 17 January 2004. p 26 ''Making intricate nano-components
that cost next to nothing is easy if you have the right workforce.
Call in the algae'' Article about the papers in JNN
special issue on diatom nanotechnology (Bentley, K, et al. JNN.
2005).
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